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    3. Allen Institute Datasets

    Allen Institute Datasets

    A collection of neuroscience datasets from the Allen Institute, including large-scale brain atlases and related resources, useful for neuroimaging and neural circuit research.

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    Websitewww.brain-map.org
    PublishedDec 30, 2025

    Categories

    1 Item
    Themed Directories

    Tags

    3 Items
    #datasets#neuroscience#health

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    title: Allen Institute Datasets slug: allen-institute-datasets category: Themed Directories tags:

    • datasets
    • neuroscience
    • health brand: Allen Institute for Brain Science brand_logo_url: https://portal.brain-map.org/assets/logo-aibs-41f8f4d0e3f6c3c0f0cfb9cecf3a3aad2ef9e9f7925e1c92c1a3f8a4f39c5dde.png source_url: http://www.brain-map.org/ featured: false images:
    • https://portal.brain-map.org/assets/home-hero-1-44a07039f5bff031f3f954ed7be35d8aacbb44e0f93a2c0c0d5857a1f5aaecf3.jpg

    summary: | Openly shared neuroscience datasets and tools from the Allen Institute for Brain Science, including large-scale brain atlases, multimodal cell-type resources, and related software and protocols for neuroanatomy, gene expression, connectivity, and computational modeling.

    features:

    • High-resolution neuroanatomical brain atlases of mammalian brains, widely cited and data-driven.
    • Resources covering multiple scientific disciplines:
      • Anatomy
      • Cell types
      • Circuits and behavior
      • Connectivity
      • Computational modeling and theory
      • Gene expression
      • Genetic tools
      • Computational analysis toolboxes
      • Hardware and experimental platforms
    • Open sharing of a broad range of research assets:
      • Neuroscience datasets
      • Software and computational tools
      • Experimental and lab protocols
      • Educational lesson plans
      • Modeling tools and machine learning algorithms
      • Cell lines and plasmids
    • Large-scale, multimodal cell census and atlas projects:
      • Complete multimodal cell census and atlas of the mouse brain via collaborative data collection and tool development.
      • Cell-type characterization in human and non-human primate brains, including gene expression, gene regulation, and morphoelectric features.
    • Project-level datasets and tools, such as:
      • MICrONS Project data: massively dense reconstructions of structural connections and functions in a cubic-millimeter volume of mouse visual cortex, with associated AI-driven analysis tools.

    use_cases:

    • Neuroimaging and brain mapping research using high-resolution mammalian brain atlases.
    • Cell-type classification studies in mouse, human, and non-human primate brains.
    • Analyses of brain connectivity, circuits, and behavior.
    • Development and benchmarking of computational and theoretical models of neural circuits.
  • Gene expression and gene regulatory network studies in the nervous system.
  • Training and evaluation of machine learning methods on dense connectomics and functional datasets.
  • Educational use in neuroscience teaching and training, leveraging lesson plans and open resources.

    • pricing: | Not specified. The content indicates that datasets, software, and related resources are openly shared, but no formal pricing or licensing details are provided here.

    notes: | This entry summarizes the Allen Institute’s openly shared brain science datasets and associated tools as a directory item. For detailed dataset catalogs, access methods, and licensing terms, refer directly to the Allen Brain Map and related portals linked from the main site.